Contact Map Explorer
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Contact Map Explorer
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A
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B
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C
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D
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F
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G
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H
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I
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J
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L
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M
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N
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P
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Q
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R
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T
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X
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__init__() (contact_map.AtomContactConcurrence method)
(contact_map.Concurrence method)
(contact_map.ConcurrencePlotter method)
(contact_map.ContactCount method)
(contact_map.ContactDifference method)
(contact_map.ContactFrequency method)
(contact_map.ContactTrajectory method)
(contact_map.DaskContactFrequency method)
(contact_map.MinimumDistanceCounter method)
(contact_map.NearestAtoms method)
(contact_map.ResidueContactConcurrence method)
(contact_map.RollingContactFrequency method)
A
add_contact_frequency() (contact_map.ContactFrequency method)
(contact_map.DaskContactFrequency method)
all_atoms (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactTrajectory attribute)
(contact_map.DaskContactFrequency attribute)
atom_contacts (contact_map.ContactFrequency attribute)
(contact_map.DaskContactFrequency attribute)
atom_count (contact_map.MinimumDistanceCounter attribute)
atom_history (contact_map.MinimumDistanceCounter attribute)
atom_pairs (contact_map.MinimumDistanceCounter attribute)
AtomContactConcurrence (class in contact_map)
B
block_slices() (in module contact_map.frequency_task)
C
Concurrence (class in contact_map)
ConcurrencePlotter (class in contact_map)
contact_frequency() (contact_map.ContactTrajectory method)
contact_map.frequency_task (module)
ContactCount (class in contact_map)
ContactDifference (class in contact_map)
ContactFrequency (class in contact_map)
ContactMap() (in module contact_map)
contacts (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactTrajectory attribute)
(contact_map.DaskContactFrequency attribute)
contacts_per_frame_task() (in module contact_map.frequency_task)
ContactTrajectory (class in contact_map)
count() (contact_map.ContactTrajectory method)
counter (contact_map.ContactCount attribute)
cutoff (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactTrajectory attribute)
(contact_map.DaskContactFrequency attribute)
D
DaskContactFrequency (class in contact_map)
default_slices() (in module contact_map.frequency_task)
df (contact_map.ContactCount attribute)
F
filter() (contact_map.ContactCount method)
from_dict() (contact_map.ContactDifference class method)
(contact_map.ContactFrequency class method)
(contact_map.ContactTrajectory class method)
(contact_map.DaskContactFrequency class method)
from_file() (contact_map.ContactDifference class method)
(contact_map.ContactFrequency class method)
(contact_map.ContactTrajectory class method)
(contact_map.DaskContactFrequency class method)
from_json() (contact_map.ContactDifference class method)
(contact_map.ContactFrequency class method)
(contact_map.ContactTrajectory class method)
(contact_map.DaskContactFrequency class method)
G
get_concurrence_labels() (contact_map.ConcurrencePlotter static method)
H
haystack (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactTrajectory attribute)
(contact_map.DaskContactFrequency attribute)
haystack_range (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactTrajectory attribute)
(contact_map.DaskContactFrequency attribute)
haystack_residue_range (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactTrajectory attribute)
(contact_map.DaskContactFrequency attribute)
haystack_residues (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactTrajectory attribute)
(contact_map.DaskContactFrequency attribute)
I
index() (contact_map.ContactTrajectory method)
J
join() (contact_map.ContactTrajectory class method)
L
load_trajectory_task() (in module contact_map.frequency_task)
M
map_task() (in module contact_map.frequency_task)
map_task_json() (in module contact_map.frequency_task)
minimum_distances (contact_map.MinimumDistanceCounter attribute)
MinimumDistanceCounter (class in contact_map)
most_common() (contact_map.ContactCount method)
most_common_atoms_for_contact() (contact_map.ContactDifference method)
(contact_map.ContactFrequency method)
(contact_map.ContactTrajectory method)
(contact_map.DaskContactFrequency method)
most_common_atoms_for_residue() (contact_map.ContactDifference method)
(contact_map.ContactFrequency method)
(contact_map.ContactTrajectory method)
(contact_map.DaskContactFrequency method)
most_common_idx() (contact_map.ContactCount method)
N
n_frames (contact_map.ContactFrequency attribute)
(contact_map.DaskContactFrequency attribute)
n_neighbors_ignored (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactTrajectory attribute)
(contact_map.DaskContactFrequency attribute)
nearest (contact_map.NearestAtoms attribute)
nearest_distance (contact_map.NearestAtoms attribute)
NearestAtoms (class in contact_map)
P
plot() (contact_map.ConcurrencePlotter method)
(contact_map.ContactCount method)
plot_axes() (contact_map.ContactCount method)
plot_concurrence() (in module contact_map)
Q
query (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactTrajectory attribute)
(contact_map.DaskContactFrequency attribute)
query_range (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactTrajectory attribute)
(contact_map.DaskContactFrequency attribute)
query_residue_range (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactTrajectory attribute)
(contact_map.DaskContactFrequency attribute)
query_residues (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactTrajectory attribute)
(contact_map.DaskContactFrequency attribute)
R
reduce_all_results() (in module contact_map.frequency_task)
reduce_all_results_json() (in module contact_map.frequency_task)
residue_contacts (contact_map.ContactFrequency attribute)
(contact_map.DaskContactFrequency attribute)
residue_count (contact_map.MinimumDistanceCounter attribute)
residue_history (contact_map.MinimumDistanceCounter attribute)
ResidueContactConcurrence (class in contact_map)
rolling_frequency() (contact_map.ContactTrajectory method)
RollingContactFrequency (class in contact_map)
S
save_to_file() (contact_map.ContactDifference method)
(contact_map.ContactFrequency method)
(contact_map.ContactTrajectory method)
(contact_map.DaskContactFrequency method)
set_labels() (contact_map.AtomContactConcurrence method)
(contact_map.Concurrence method)
(contact_map.ResidueContactConcurrence method)
sorted_distances (contact_map.NearestAtoms attribute)
sparse_matrix (contact_map.ContactCount attribute)
subtract_contact_frequency() (contact_map.ContactFrequency method)
(contact_map.DaskContactFrequency method)
T
to_dict() (contact_map.ContactDifference method)
(contact_map.ContactFrequency method)
(contact_map.ContactTrajectory method)
(contact_map.DaskContactFrequency method)
to_json() (contact_map.ContactDifference method)
(contact_map.ContactFrequency method)
(contact_map.ContactTrajectory method)
(contact_map.DaskContactFrequency method)
to_networkx() (contact_map.ContactCount method)
topology (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactTrajectory attribute)
(contact_map.DaskContactFrequency attribute)
(contact_map.MinimumDistanceCounter attribute)
U
use_atom_slice (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactTrajectory attribute)
(contact_map.DaskContactFrequency attribute)
X
x_values (contact_map.ConcurrencePlotter attribute)
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