contact_map.ResidueContactConcurrence

class contact_map.ResidueContactConcurrence(trajectory, residue_contacts, cutoff=0.45, select="and symbol != 'H'")

Contact concurrences for residue contacts.

Parameters:

• trajectory (mdtraj.Trajectory) – the trajectory to analyze
• residue_contacts (list) – output from contact_map.residue_contacts.most_common()
• cutoff (float) – cutoff, in nm. Should be the same as used in the contact map.
• select (string) – additional atom selection string for MDTraj; defaults to “and symbol != ‘H’”

__init__(trajectory, residue_contacts, cutoff=0.45, select="and symbol != 'H'")

Initialize self. See help(type(self)) for accurate signature.

Methods

__init__(trajectory, residue_contacts[, …])	Initialize self.
set_labels(labels)	Set the contact labels

set_labels(labels)

Set the contact labels

Parameters:labels (list of string) – labels for each contact pair