contact_map.AtomContactConcurrence

class contact_map.AtomContactConcurrence(trajectory, atom_contacts, cutoff=0.45)

Contact concurrences for atom contacts.

Parameters:

• trajectory (mdtraj.Trajectory) – the trajectory to analyze
• atom_contacts (list) – output from contact_map.atom_contacts.most_common()
• cutoff (float) – cutoff, in nm. Should be the same as used in the contact map.

__init__(trajectory, atom_contacts, cutoff=0.45)

Initialize self. See help(type(self)) for accurate signature.

Methods

__init__(trajectory, atom_contacts[, cutoff])	Initialize self.
set_labels(labels)	Set the contact labels

set_labels(labels)

Set the contact labels

Parameters:labels (list of string) – labels for each contact pair