contact_map.AtomContactConcurrence¶

class contact_map.AtomContactConcurrence(trajectory, atom_contacts, cutoff=0.45)[source]¶

Contact concurrences for atom contacts.

Parameters

trajectory (mdtraj.Trajectory) – the trajectory to analyze
atom_contacts (list) – output from contact_map.atom_contacts.most_common()
cutoff (float) – cutoff, in nm. Should be the same as used in the contact map.

__init__(trajectory, atom_contacts, cutoff=0.45)[source]¶: Initialize self. See help(type(self)) for accurate signature.

Methods

`__init__`(trajectory, atom_contacts[, cutoff])	Initialize self.
`set_labels`(labels)	Set the contact labels