Index

_

__init__() (contact_map.ContactCount method) (contact_map.ContactDifference method) (contact_map.ContactFrequency method) (contact_map.ContactMap method) (min_dist.MinimumDistanceCounter method) (min_dist.NearestAtoms method)

A

atom_contacts (contact_map.ContactFrequency attribute) atom_count (min_dist.MinimumDistanceCounter attribute)

atom_history (min_dist.MinimumDistanceCounter attribute) atom_pairs (min_dist.MinimumDistanceCounter attribute)

C

contact_map() (contact_map.ContactFrequency method) (contact_map.ContactMap method) ContactCount (class in contact_map) ContactDifference (class in contact_map) ContactFrequency (class in contact_map)

ContactMap (class in contact_map) counter (contact_map.ContactCount attribute) cutoff (contact_map.ContactDifference attribute) (contact_map.ContactFrequency attribute) (contact_map.ContactMap attribute)

D

df (contact_map.ContactCount attribute)

F

from_file() (contact_map.ContactDifference method) (contact_map.ContactFrequency method) (contact_map.ContactMap method)

H

haystack (contact_map.ContactDifference attribute) (contact_map.ContactFrequency attribute) (contact_map.ContactMap attribute)

M

minimum_distances (min_dist.MinimumDistanceCounter attribute) MinimumDistanceCounter (class in min_dist) most_common() (contact_map.ContactCount method) most_common_atoms_for_contact() (contact_map.ContactDifference method) (contact_map.ContactFrequency method) (contact_map.ContactMap method)

most_common_atoms_for_residue() (contact_map.ContactDifference method) (contact_map.ContactFrequency method) (contact_map.ContactMap method) most_common_idx() (contact_map.ContactCount method)

N

n_frames (contact_map.ContactFrequency attribute) n_neighbors_ignored (contact_map.ContactDifference attribute) (contact_map.ContactFrequency attribute) (contact_map.ContactMap attribute)

nearest (min_dist.NearestAtoms attribute) nearest_distance (min_dist.NearestAtoms attribute) NearestAtoms (class in min_dist)

P

plot() (contact_map.ContactCount method)

Q

query (contact_map.ContactDifference attribute) (contact_map.ContactFrequency attribute) (contact_map.ContactMap attribute)

R

residue_contacts (contact_map.ContactFrequency attribute) residue_count (min_dist.MinimumDistanceCounter attribute) residue_history (min_dist.MinimumDistanceCounter attribute) residue_ignore_atom_idxs (contact_map.ContactDifference attribute) (contact_map.ContactFrequency attribute) (contact_map.ContactMap attribute)

residue_query_atom_idxs (contact_map.ContactDifference attribute) (contact_map.ContactFrequency attribute) (contact_map.ContactMap attribute)

S

save_to_file() (contact_map.ContactDifference method) (contact_map.ContactFrequency method) (contact_map.ContactMap method)

sorted_distances (min_dist.NearestAtoms attribute) sparse_matrix (contact_map.ContactCount attribute)

T

topology (contact_map.ContactDifference attribute) (contact_map.ContactFrequency attribute) (contact_map.ContactMap attribute) (min_dist.MinimumDistanceCounter attribute)