Contact Map Explorer
docs
Installation
Examples
API Reference
Contact Map Explorer
Docs
»
Index
Edit on GitHub
Index
_
|
A
|
B
|
C
|
D
|
F
|
G
|
H
|
I
|
L
|
M
|
N
|
P
|
Q
|
R
|
S
|
T
|
U
|
X
_
__init__() (contact_map.AtomContactConcurrence method)
(contact_map.Concurrence method)
(contact_map.ConcurrencePlotter method)
(contact_map.ContactCount method)
(contact_map.ContactDifference method)
(contact_map.ContactFrequency method)
(contact_map.ContactMap method)
(contact_map.DaskContactFrequency method)
(contact_map.MinimumDistanceCounter method)
(contact_map.NearestAtoms method)
(contact_map.ResidueContactConcurrence method)
A
add_contact_frequency() (contact_map.ContactFrequency method)
(contact_map.DaskContactFrequency method)
all_atoms (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactMap attribute)
(contact_map.DaskContactFrequency attribute)
atom_contacts (contact_map.ContactFrequency attribute)
(contact_map.DaskContactFrequency attribute)
atom_count (contact_map.MinimumDistanceCounter attribute)
atom_history (contact_map.MinimumDistanceCounter attribute)
atom_pairs (contact_map.MinimumDistanceCounter attribute)
AtomContactConcurrence (class in contact_map)
B
block_slices() (in module contact_map.frequency_task)
C
Concurrence (class in contact_map)
ConcurrencePlotter (class in contact_map)
contact_map() (contact_map.ContactDifference method)
(contact_map.ContactFrequency method)
(contact_map.ContactMap method)
(contact_map.DaskContactFrequency method)
contact_map.frequency_task (module)
ContactCount (class in contact_map)
ContactDifference (class in contact_map)
ContactFrequency (class in contact_map)
ContactMap (class in contact_map)
contacts (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactMap attribute)
(contact_map.DaskContactFrequency attribute)
counter (contact_map.ContactCount attribute)
cutoff (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactMap attribute)
(contact_map.DaskContactFrequency attribute)
D
DaskContactFrequency (class in contact_map)
default_slices() (in module contact_map.frequency_task)
df (contact_map.ContactCount attribute)
F
from_dict() (contact_map.ContactDifference class method)
(contact_map.ContactFrequency class method)
(contact_map.ContactMap class method)
(contact_map.DaskContactFrequency class method)
from_file() (contact_map.ContactDifference class method)
(contact_map.ContactFrequency class method)
(contact_map.ContactMap class method)
(contact_map.DaskContactFrequency class method)
from_json() (contact_map.ContactDifference class method)
(contact_map.ContactFrequency class method)
(contact_map.ContactMap class method)
(contact_map.DaskContactFrequency class method)
G
get_concurrence_labels() (contact_map.ConcurrencePlotter static method)
H
haystack (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactMap attribute)
(contact_map.DaskContactFrequency attribute)
haystack_residue_range (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactMap attribute)
(contact_map.DaskContactFrequency attribute)
haystack_residues (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactMap attribute)
(contact_map.DaskContactFrequency attribute)
I
idx_to_s_idx() (contact_map.ContactDifference method)
(contact_map.ContactFrequency method)
(contact_map.ContactMap method)
(contact_map.DaskContactFrequency method)
L
load_trajectory_task() (in module contact_map.frequency_task)
M
map_task() (in module contact_map.frequency_task)
map_task_json() (in module contact_map.frequency_task)
minimum_distances (contact_map.MinimumDistanceCounter attribute)
MinimumDistanceCounter (class in contact_map)
most_common() (contact_map.ContactCount method)
most_common_atoms_for_contact() (contact_map.ContactDifference method)
(contact_map.ContactFrequency method)
(contact_map.ContactMap method)
(contact_map.DaskContactFrequency method)
most_common_atoms_for_residue() (contact_map.ContactDifference method)
(contact_map.ContactFrequency method)
(contact_map.ContactMap method)
(contact_map.DaskContactFrequency method)
most_common_idx() (contact_map.ContactCount method)
N
n_frames (contact_map.ContactFrequency attribute)
(contact_map.DaskContactFrequency attribute)
n_neighbors_ignored (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactMap attribute)
(contact_map.DaskContactFrequency attribute)
nearest (contact_map.NearestAtoms attribute)
nearest_distance (contact_map.NearestAtoms attribute)
NearestAtoms (class in contact_map)
P
plot() (contact_map.ConcurrencePlotter method)
(contact_map.ContactCount method)
plot_concurrence() (in module contact_map)
Q
query (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactMap attribute)
(contact_map.DaskContactFrequency attribute)
query_residue_range (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactMap attribute)
(contact_map.DaskContactFrequency attribute)
query_residues (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactMap attribute)
(contact_map.DaskContactFrequency attribute)
R
reduce_all_results() (in module contact_map.frequency_task)
reduce_all_results_json() (in module contact_map.frequency_task)
residue_contacts (contact_map.ContactFrequency attribute)
(contact_map.DaskContactFrequency attribute)
residue_count (contact_map.MinimumDistanceCounter attribute)
residue_history (contact_map.MinimumDistanceCounter attribute)
residue_ignore_atom_idxs (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactMap attribute)
(contact_map.DaskContactFrequency attribute)
residue_query_atom_idxs (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactMap attribute)
(contact_map.DaskContactFrequency attribute)
ResidueContactConcurrence (class in contact_map)
S
s_idx_to_idx() (contact_map.ContactDifference method)
(contact_map.ContactFrequency method)
(contact_map.ContactMap method)
(contact_map.DaskContactFrequency method)
save_to_file() (contact_map.ContactDifference method)
(contact_map.ContactFrequency method)
(contact_map.ContactMap method)
(contact_map.DaskContactFrequency method)
set_labels() (contact_map.AtomContactConcurrence method)
(contact_map.Concurrence method)
(contact_map.ResidueContactConcurrence method)
sorted_distances (contact_map.NearestAtoms attribute)
sparse_matrix (contact_map.ContactCount attribute)
subtract_contact_frequency() (contact_map.ContactFrequency method)
(contact_map.DaskContactFrequency method)
T
to_dict() (contact_map.ContactDifference method)
(contact_map.ContactFrequency method)
(contact_map.ContactMap method)
(contact_map.DaskContactFrequency method)
to_json() (contact_map.ContactDifference method)
(contact_map.ContactFrequency method)
(contact_map.ContactMap method)
(contact_map.DaskContactFrequency method)
topology (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactMap attribute)
(contact_map.DaskContactFrequency attribute)
(contact_map.MinimumDistanceCounter attribute)
U
use_atom_slice (contact_map.ContactDifference attribute)
(contact_map.ContactFrequency attribute)
(contact_map.ContactMap attribute)
(contact_map.DaskContactFrequency attribute)
X
x_values (contact_map.ConcurrencePlotter attribute)
Read the Docs
v: docs
Versions
latest
stable
v0.3.3
v0.3.1
v0.3.0
v0.2.0
Downloads
On Read the Docs
Project Home
Builds
Free document hosting provided by
Read the Docs
.